Calculate p-values for enrichment of set | Ontological annotations | Gene Ontology (GO) annotations
Package: gsEasy 1.5
gsEasy: Gene Set Enrichment Analysis in R
R-interface to C++ implementation of the rank/score permutation based GSEA test (Subramanian et al 2005 <doi:10.1073/pnas.0506580102>).
Authors:
gsEasy_1.5.tar.gz
gsEasy_1.5.zip(r-4.7)gsEasy_1.5.zip(r-4.6)gsEasy_1.5.zip(r-4.5)
gsEasy_1.5.tgz(r-4.6-x86_64)gsEasy_1.5.tgz(r-4.6-arm64)gsEasy_1.5.tgz(r-4.5-x86_64)gsEasy_1.5.tgz(r-4.5-arm64)
gsEasy_1.5.tar.gz(r-4.7-arm64)gsEasy_1.5.tar.gz(r-4.7-x86_64)gsEasy_1.5.tar.gz(r-4.6-arm64)gsEasy_1.5.tar.gz(r-4.6-x86_64)
gsEasy_1.5.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
gsEasy/json (API)
| # Install 'gsEasy' in R: |
| install.packages('gsEasy', repos = c('https://daniel-jg.r-universe.dev', 'https://cloud.r-project.org')) |
Datasets:
- GO_gene_sets - GO term gene sets
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:70aa0ab824. Checks:13 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-arm64 | OK | 147 | ||
| linux-devel-x86_64 | OK | 104 | ||
| source / vignettes | OK | 176 | ||
| linux-release-arm64 | OK | 153 | ||
| linux-release-x86_64 | OK | 147 | ||
| macos-release-arm64 | OK | 94 | ||
| macos-release-x86_64 | OK | 211 | ||
| macos-oldrel-arm64 | OK | 81 | ||
| macos-oldrel-x86_64 | OK | 147 | ||
| windows-devel | OK | 92 | ||
| windows-release | OK | 143 | ||
| windows-oldrel | OK | 81 | ||
| wasm-release | OK | 90 |
Exports:get_GO_gene_setsget_ontological_gene_setsgset
Dependencies:ontologyIndexRcpp
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Gene Set Enrichment Analysis in R | gsEasy-package gsEasy |
| Create list of gene sets defined by GO term annotation | get_GO_gene_sets |
| Create list of gene sets defined by ontological annotation | get_ontological_gene_sets |
| GO term gene sets | GO_gene_sets |
| Gene set enrichment test | gset |
