BeviMed Guide11 months ago
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BeviMed Introduction2 years ago
References
BeviMed with VCFs2 years ago
ontologySimilarity Examples2 years ago
Computing similarity matrices | Assessing statistical significance of similarity | Using a similarity matrix | Using a sim_index object | Example | Against a vector | Sampling the null distribution
Using the Gene Ontology data objects2 years ago
References
Introduction to ontologySimilarity2 years ago
Example
Prior phenotypic information2 years ago
References
Similarity Regression - Introduction2 years ago
References
Plotting Ontological Terms2 years ago
Plotting Terms | Graphical parameters | Frequencies | Term sets | Edge attributes | Plots for publications
Plotting Term Grids2 years ago
gsEasy2 years ago
Calculate p-values for enrichment of set | Ontological annotations | Gene Ontology (GO) annotations
IntervalSurgeon3 years ago
Introduction | Detached intervals | Finding overlaps between sets of intervals | Use with genomic intervals
Creating an ontology_index4 years ago
Reading in an OBO file | Adding term properties | Converting from OWL to OBO format | Term equivalence | Creating an ontology_index explicitly
Introduction to ontologyX4 years ago
Removing redundant terms | Finding all ancestors of a set of terms | Operating on subclasses | Additional ontological functionality
