Package: SimReg 3.4

SimReg: Similarity Regression

Similarity regression, evaluating the probability of association between sets of ontological terms and binary response vector. A no-association model is compared with one in which the log odds of a true response is linked to the semantic similarity between terms and a latent characteristic ontological profile - 'Phenotype Similarity Regression for Identifying the Genetic Determinants of Rare Diseases', Greene et al 2016 <doi:10.1016/j.ajhg.2016.01.008>.

Authors:Daniel Greene

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9 exports 1.08 score 8 dependencies 3 mentions 6 scripts 247 downloads

Last updated 7 months agofrom:d53275aea9. Checks:OK: 9. Indexed: yes.

Exports:get_term_marginalsget_termslog_BFplot_term_marginalsposterior_predictionprob_associationsim_regsum_log_probsterm_marginals

Dependencies:BiocGenericsgraphontologyIndexontologyPlotontologySimilaritypaintmapRcppRgraphviz