Package: SimReg 3.4

SimReg: Similarity Regression

Similarity regression, evaluating the probability of association between sets of ontological terms and binary response vector. A no-association model is compared with one in which the log odds of a true response is linked to the semantic similarity between terms and a latent characteristic ontological profile - 'Phenotype Similarity Regression for Identifying the Genetic Determinants of Rare Diseases', Greene et al 2016 <doi:10.1016/j.ajhg.2016.01.008>.

Authors:Daniel Greene

SimReg_3.4.tar.gz
SimReg_3.4.zip(r-4.7)SimReg_3.4.zip(r-4.6)SimReg_3.4.zip(r-4.5)
SimReg_3.4.tgz(r-4.6-x86_64)SimReg_3.4.tgz(r-4.6-arm64)SimReg_3.4.tgz(r-4.5-x86_64)SimReg_3.4.tgz(r-4.5-arm64)
SimReg_3.4.tar.gz(r-4.6-arm64)SimReg_3.4.tar.gz(r-4.7-arm64)SimReg_3.4.tar.gz(r-4.7-x86_64)SimReg_3.4.tar.gz(r-4.6-x86_64)
SimReg_3.4.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
SimReg/json (API)

# Install 'SimReg' in R:
install.packages('SimReg', repos = c('https://daniel-jg.r-universe.dev', 'https://cloud.r-project.org'))
Uses libs:
  • c++– GNU Standard C++ Library v3

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

cpp

2.78 score 7 scripts 162 downloads 3 mentions 9 exports 9 dependencies

Last updated from:d53275aea9. Checks:12 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-arm64OK157
linux-devel-x86_64OK161
source / vignettesOK194
linux-release-x86_64OK168
macos-release-arm64OK108
macos-release-x86_64OK315
macos-oldrel-arm64OK102
macos-oldrel-x86_64OK165
windows-develOK129
windows-releaseOK140
windows-oldrelOK183
wasm-releaseOK134

Exports:get_term_marginalsget_termslog_BFplot_term_marginalsposterior_predictionprob_associationsim_regsum_log_probsterm_marginals

Dependencies:BiocGenericsgenericsgraphontologyIndexontologyPlotontologySimilaritypaintmapRcppRgraphviz

Prior phenotypic information

Daniel Greene

Rendered fromSimReg-Priors.Rmdusingknitr::rmarkdownon Jun 01 2026.

Last update: 2024-02-22
Started: 2016-03-06

Similarity Regression - Introduction

Daniel Greene

Rendered fromSimReg-Introduction.Rmdusingknitr::rmarkdownon Jun 01 2026.

Last update: 2024-02-22
Started: 2016-08-16