Package: ontologyIndex 2.12

ontologyIndex: Reading Ontologies into R

Functions for reading ontologies into R as lists and manipulating sets of ontological terms - 'ontologyX: A suite of R packages for working with ontological data', Greene et al 2017 <doi:10.1093/bioinformatics/btw763>.

Authors:Daniel Greene <[email protected]>

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ontologyIndex.pdf |ontologyIndex.html✨
ontologyIndex/json (API)
NEWS

# Install 'ontologyIndex' in R:
install.packages('ontologyIndex', repos = c('https://daniel-jg.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:
  • go - GO index
  • hpo - HPO index
  • mpo - MPO index

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

7.15 score 6 stars 27 packages 286 scripts 1.7k downloads 3 mentions 16 exports 0 dependencies

Last updated 1 years agofrom:0c16aa8649. Checks:4 OK, 5 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 06 2025
R-4.5-winOKMar 06 2025
R-4.5-macOKMar 06 2025
R-4.5-linuxOKMar 06 2025
R-4.4-winNOTEMar 06 2025
R-4.4-macNOTEMar 06 2025
R-4.4-linuxNOTEMar 06 2025
R-4.3-winNOTEMar 06 2025
R-4.3-macNOTEMar 06 2025

Exports:checkexclude_descendantsget_ancestorsget_descendantsget_OBOget_ontologyget_relation_namesget_term_descendancy_matrixget_term_frequenciesget_term_info_contentget_term_propertyintersection_with_descendantsminimal_setontology_indexpropagate_relationsprune_descendants

Dependencies:

Creating an ontology_index

Daniel Greene

Rendered fromreading-ontologies.Rmdusingknitr::rmarkdownon Mar 06 2025.

Last update: 2022-08-15
Started: 2016-10-28

Introduction to ontologyX

Daniel Greene

Rendered fromintro-to-ontologyX.Rmdusingknitr::rmarkdownon Mar 06 2025.

Last update: 2022-08-15
Started: 2016-10-28