Package: ontologyIndex 2.12

ontologyIndex: Reading Ontologies into R

Functions for reading ontologies into R as lists and manipulating sets of ontological terms - 'ontologyX: A suite of R packages for working with ontological data', Greene et al 2017 <doi:10.1093/bioinformatics/btw763>.

Authors:Daniel Greene <[email protected]>

ontologyIndex_2.12.tar.gz
ontologyIndex_2.12.zip(r-4.7)ontologyIndex_2.12.zip(r-4.6)ontologyIndex_2.12.zip(r-4.5)
ontologyIndex_2.12.tgz(r-4.6-any)ontologyIndex_2.12.tgz(r-4.5-any)
ontologyIndex_2.12.tar.gz(r-4.7-any)ontologyIndex_2.12.tar.gz(r-4.6-any)
ontologyIndex_2.12.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
ontologyIndex/json (API)
NEWS

# Install 'ontologyIndex' in R:
install.packages('ontologyIndex', repos = c('https://daniel-jg.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:
  • go - GO index
  • hpo - HPO index
  • mpo - MPO index

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

7.36 score 6 stars 26 packages 425 scripts 1.9k downloads 3 mentions 16 exports 0 dependencies

Last updated from:0c16aa8649. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK122
source / vignettesOK183
linux-release-x86_64OK112
macos-release-arm64OK111
macos-oldrel-arm64OK90
windows-develOK83
windows-releaseOK94
windows-oldrelOK172
wasm-releaseOK92

Exports:checkexclude_descendantsget_ancestorsget_descendantsget_OBOget_ontologyget_relation_namesget_term_descendancy_matrixget_term_frequenciesget_term_info_contentget_term_propertyintersection_with_descendantsminimal_setontology_indexpropagate_relationsprune_descendants

Dependencies:

Creating an ontology_index

Daniel Greene

Rendered fromreading-ontologies.Rmdusingknitr::rmarkdownon May 16 2026.

Last update: 2022-08-15
Started: 2016-10-28

Introduction to ontologyX

Daniel Greene

Rendered fromintro-to-ontologyX.Rmdusingknitr::rmarkdownon May 16 2026.

Last update: 2022-08-15
Started: 2016-10-28