Introduction | Detached intervals | Finding overlaps between sets of intervals | Use with genomic intervals
Package: IntervalSurgeon 1.3
IntervalSurgeon: Operating on Integer-Bounded Intervals
Manipulate integer-bounded intervals including finding overlaps, piling and merging.
Authors:
IntervalSurgeon_1.3.tar.gz
IntervalSurgeon_1.3.zip(r-4.7)IntervalSurgeon_1.3.zip(r-4.6)IntervalSurgeon_1.3.zip(r-4.5)
IntervalSurgeon_1.3.tgz(r-4.6-x86_64)IntervalSurgeon_1.3.tgz(r-4.6-arm64)IntervalSurgeon_1.3.tgz(r-4.5-x86_64)IntervalSurgeon_1.3.tgz(r-4.5-arm64)
IntervalSurgeon_1.3.tar.gz(r-4.7-arm64)IntervalSurgeon_1.3.tar.gz(r-4.7-x86_64)IntervalSurgeon_1.3.tar.gz(r-4.6-arm64)IntervalSurgeon_1.3.tar.gz(r-4.6-x86_64)
IntervalSurgeon_1.3.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
IntervalSurgeon/json (API)
| # Install 'IntervalSurgeon' in R: |
| install.packages('IntervalSurgeon', repos = c('https://daniel-jg.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:97466dba49. Checks:13 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-arm64 | OK | 111 | ||
| linux-devel-x86_64 | OK | 115 | ||
| source / vignettes | OK | 161 | ||
| linux-release-arm64 | OK | 107 | ||
| linux-release-x86_64 | OK | 118 | ||
| macos-release-arm64 | OK | 85 | ||
| macos-release-x86_64 | OK | 271 | ||
| macos-oldrel-arm64 | OK | 76 | ||
| macos-oldrel-x86_64 | OK | 181 | ||
| windows-devel | OK | 96 | ||
| windows-release | OK | 101 | ||
| windows-oldrel | OK | 87 | ||
| wasm-release | OK | 105 |
Exports:annotatebreakscovereddepthdetached_sorted_nonemptyflattenintersectedintersectsjoinoverlapspileproportion_overlapsectionssetdiffsstitchunions
Dependencies:Rcpp
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Operating on Integer-Bounded Intervals | IntervalSurgeon-package IntervalSurgeon |
| Annotate one set of intervals with the names of those which intersect with the other | annotate |
| Get break points for set of intervals | breaks |
| Depth of piled intervals | depth |
| Check intervals are detached, sorted and non-empty. | detached_sorted_nonempty |
| Flatten a set of intervals | flatten |
| Determine whether each interval in a given set are intersected/covered by intervals in another set | covered intersected |
| Get all overlapping tuples of intervals from multiple sets | join |
| Compute overlaps of two sets of detached and sorted intervals | intersects overlaps setdiffs unions |
| Get IDs of intervals covering each sub-interval | pile |
| Calculate proportion overlapping of intersecting intervals | proportion_overlap |
| Get the sections from a set of interval breaks | sections |
| Stich together touching intervals and remove empty intervals | stitch |
