Package: BeviMed 5.10
BeviMed: Bayesian Evaluation of Variant Involvement in Mendelian Disease
A fast integrative genetic association test for rare diseases based on a model for disease status given allele counts at rare variant sites. Probability of association, mode of inheritance and probability of pathogenicity for individual variants are all inferred in a Bayesian framework - 'A Fast Association Test for Identifying Pathogenic Variants Involved in Rare Diseases', Greene et al 2017 <doi:10.1016/j.ajhg.2017.05.015>.
Authors:
BeviMed_5.10.tar.gz
BeviMed_5.10.zip(r-4.5)BeviMed_5.10.zip(r-4.4)BeviMed_5.10.zip(r-4.3)
BeviMed_5.10.tgz(r-4.4-x86_64)BeviMed_5.10.tgz(r-4.4-arm64)BeviMed_5.10.tgz(r-4.3-x86_64)BeviMed_5.10.tgz(r-4.3-arm64)
BeviMed_5.10.tar.gz(r-4.5-noble)BeviMed_5.10.tar.gz(r-4.4-noble)
BeviMed_5.10.tgz(r-4.4-emscripten)BeviMed_5.10.tgz(r-4.3-emscripten)
BeviMed.pdf |BeviMed.html✨
BeviMed/json (API)
NEWS
# Install 'BeviMed' in R: |
install.packages('BeviMed', repos = c('https://daniel-jg.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 6 months agofrom:060b063457. Checks:OK: 9. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Oct 27 2024 |
R-4.5-win-x86_64 | OK | Oct 27 2024 |
R-4.5-linux-x86_64 | OK | Oct 27 2024 |
R-4.4-win-x86_64 | OK | Oct 27 2024 |
R-4.4-mac-x86_64 | OK | Oct 27 2024 |
R-4.4-mac-aarch64 | OK | Oct 27 2024 |
R-4.3-win-x86_64 | OK | Oct 27 2024 |
R-4.3-mac-x86_64 | OK | Oct 27 2024 |
R-4.3-mac-aarch64 | OK | Oct 27 2024 |
Exports:bevimedbevimed_mbevimed_polytomousconditional_prob_pathogenicexpected_explainedexplaining_variantsextract_conditional_prob_pathogenicextract_expected_explainedextract_explaining_variantsextract_gamma1_evidenceextract_prob_associationextract_prob_pathogenicgamma0_evidencegamma1_evidencelog_BFprob_associationprob_association_mprob_pathogenicsubset_variants
BeviMed Guide
Rendered fromGuide.Rnw
usingknitr::knitr
on Oct 27 2024.Last update: 2024-05-30
Started: 2017-03-01
BeviMed Introduction
Rendered fromIntro.Rmd
usingknitr::rmarkdown
on Oct 27 2024.Last update: 2024-05-30
Started: 2016-05-03
BeviMed with VCFs
Rendered fromvcf.Rmd
usingknitr::rmarkdown
on Oct 27 2024.Last update: 2024-05-30
Started: 2017-02-16